decon_blastBTK

1.067 versions

github.com/Aquatic-Symbiosis-Genomics-Project/BLAST-scripts

wrapper to parse out BTK ids and blast them vs a blast server

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License: MIT

Installation

# Add this to your shard.yml
dependencies:
  decon_blastBTK:
    github: Aquatic-Symbiosis-Genomics-Project/BLAST-scripts
    version: ~> 1.06

Then run:

shards install

Crystal

no constraint declared

License

MIT

Author

epaule

Target

This version declares no dependencies.

Scripts for automated blast searches from btk from downloaded tables with a selection. It will only blast the sequences selected in BTK.

bash decon_blastBTK.sh ASSEMBLY.FA BTK.CSV WORKDIRECTORY

or (the crystal version) ./decon_blastBTK -f ASSEMBLY.FA -b BTK.csv -o WORKDIRECTORY

For now, put in working dir:

or (for the crystal version)