decon_blastBTK

1.0.47 versions

github.com/Aquatic-Symbiosis-Genomics-Project/BLAST-scripts

wrapper to parse out BTK ids and blast them vs a blast server

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License: MIT

Nothing has been indexed for 1.0.4 yet. The tag is recorded, its shard.yml has not been read, so the manifest and dependency list below are empty because they are unknown rather than because they are absent.

Installation

# Add this to your shard.yml
dependencies:
  decon_blastBTK:
    github: Aquatic-Symbiosis-Genomics-Project/BLAST-scripts
    version: ~> 1.0.4

Then run:

shards install

shard.yml

No shard.yml has been indexed for 1.0.4. You can read it on the repository.

Dependencies

Unknown: the shard.yml for this version has not been read yet.

README

This README is the one indexed from the repository at its latest ref, not from the tag for this version.

BLAST-scripts

Scripts for automated blast searches from btk from downloaded tables with a selection. It will only blast the sequences selected in BTK.

releases

linux x86_64 crystal binary

Run like this:

bash decon_blastBTK.sh ASSEMBLY.FA BTK.CSV WORKDIRECTORY

or (the crystal version) ./decon_blastBTK -f ASSEMBLY.FA -b BTK.csv -o WORKDIRECTORY

Usage

For now, put in working dir:

get_scaffolds.py
multif_to_singlef.py
decon_blastBTK.sh
scaffold_assembly.fasta
btk.csv

or (for the crystal version)

decon_blastBTK
scaffold_assembly.fasta
btk.csv

decon_blastBTK

Installation

shard.yml

Dependencies

README

BLAST-scripts

releases

Run like this:

Usage

Documentation

Links

This release

Dependents

Repository

Metadata